geneloc {MatrixEQTL}R Documentation

Artificial data for Matrix eQTL sample code: Gene location file.

Description

Artificial Gene location file for 10 genes.

geneid chr left right
Gene_01 chr1 721289 731289
Gene_02 chr1 752565 762565
... ... ... ...

Format

A data frame with 4 columns.

geneid

A column with gene names. The order does not have to match the gene expression data set.

chr

Chromosome number, i.e. chr1.

left

Lower (smaller) coordinate of the gene begining/end.

right

Upper (larger) coordinate of the gene begining/end.

References

The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/

See Also

See Matrix_eQTL_engine for reference and sample code.

[Package MatrixEQTL version 2.1.1 Index]