A mixter model approach for ChIP-chip data

Documentation for package ‘mixer’ version 1.03

assign.lfdr	assign local FDR estimation to observed scores
code	coding sequence of each Tilling array probe
code.AT.GC	coding sequence of each Tilling array probe
get.sd	standard deviation (error) of signal average
get.seq	get probe sequence from chrom sequence
gff	write out peaks in gff format
group.seq	break down a long sequence into matrix
is.lower	check wether the sequence is lower case
lfdr	estimate local FDR
mergeWindow	merge identified windows (peaks)
norm.GC	Normalize 2-color array ChIP-chip data based on GC content
plot.lfdr	plot or print local FDR result
print.lfdr	plot or print local FDR result
read.lfdr	read and write local FDR result
savgol.coef	coefficients of Savitzky-Golay smoothing filter for 1st/2nd derivative
win	calculate window-level score
write.lfdr	read and write local FDR result