A mixter model approach for ChIP-chip data


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Documentation for package ‘mixer’ version 1.03

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assign.lfdr assign local FDR estimation to observed scores
code coding sequence of each Tilling array probe
code.AT.GC coding sequence of each Tilling array probe
get.sd standard deviation (error) of signal average
get.seq get probe sequence from chrom sequence
gff write out peaks in gff format
group.seq break down a long sequence into matrix
is.lower check wether the sequence is lower case
lfdr estimate local FDR
mergeWindow merge identified windows (peaks)
norm.GC Normalize 2-color array ChIP-chip data based on GC content
plot.lfdr plot or print local FDR result
print.lfdr plot or print local FDR result
read.lfdr read and write local FDR result
savgol.coef coefficients of Savitzky-Golay smoothing filter for 1st/2nd derivative
win calculate window-level score
write.lfdr read and write local FDR result