gff {mixer}R Documentation

write out peaks in gff format

Description

write the output of function mergeWindows into a gff file, which can be displayed by NimbleGen software SignalMap

Usage

gff(mpks, file, source="ChIP", feature=".", strand="+", frame=".")

Arguments

mpks peaks, from funcion merge.window
file output file name
source value for source column in gff file
feature value for feature column in gff file
strand value for strand column in gff file
frame value for frame column in gff file

Author(s)

Wei Sun

See Also

mergeWindow


[Package mixer version 1.01 Index]