assign.lfdr |
assign local FDR estimation to observed scores |
code |
coding sequence of each Tilling array probe |
code.AT.GC |
coding sequence of each Tilling array probe |
get.sd |
standard deviation (error) of signal average |
get.seq |
get probe sequence from chrom sequence |
gff |
write out peaks in gff format |
group.seq |
break down a long sequence into matrix |
is.lower |
check wether the sequence is lower case |
lfdr |
estimate local FDR |
mergeWindow |
merge identified windows (peaks) |
norm.GC |
Normalize 2-color array ChIP-chip data based on GC content |
plot.lfdr |
plot or print local FDR result |
print.lfdr |
plot or print local FDR result |
read.lfdr |
read and write local FDR result |
savgol.coef |
coefficients of Savitzky-Golay smoothing filter for 1st/2nd derivative |
win |
calculate window-level score |
write.lfdr |
read and write local FDR result |