genoCN 1.02, April 21 2009

Source: genoCN_1.02.tar.gz

Windows Binary: genoCN_1.02.zip

Mac OS X Binary: genoCN_1.02_R_i386-apple-darwin8.11.1.tar.gz

genoCN 1.03, June 29 2009

Updates:

(1) For genoCNV, changes Ds=c(1e8, 1e8, rep(1e6, 7))

(2) For both genoCNV and genoCNA, change epsilon=0.005.

(3) For both genoCNA and genoCNV, add an element “sample” in Theta1 (the list to be returned) to keep the parameter “sampleID”

Source: genoCN_1.03.tar.gz

Windows Binary: genoCN_1.03.zip

Mac OS X Binary: genoCN_1.03_R_i386-apple-darwin8.11.1.tar.gz

genoCN 1.04, Aug 11 2009

Updates:

(1) Fix a bug in function postP. Previously if one of the forward probabilities is –Inf for the last SNP (which is very rare situation), the posterior probability of the last SNP is not correct. The program will stop with an error message “> Error in postP(f.chr, b.chr) : sum of posterior P is not 1”

(2) Fix a bug in handling missing data. It is rare to see missing values in LRR or BAF, but if either LRR or BAF is missing in probe, we skip this probe. Previously there is a bug in handling missing data, which leads to an error message “Error in data.frame(chr = seg.chr, start = seg.start, end = seg.end, state= seg.sat, : arguments imply differing number of rows: 1, 0”. It is fixed in this version.

Source: genoCN_1.04.tar.gz

Windows Binary: genoCN_1.04.zip

Mac OS X Binary: genoCN_1.04_R_i386-apple-darwin8.11.1.tar.gz

genoCN 1.05, Sep 11 2009

Updates:

(1) Fix a bug in function genoCNA. Previously if there is copy number only probe in the input data, it will pop up an error message regarding to the B Allele Frequency.

Source: genoCN_1.05.tar.gz

Windows Binary:

Mac OS X Binary: genoCN_1.05_R_i386-apple-darwin8.11.1.tar.gz