2008

Zeng D, Lin DY, Lin X. 2008. Semiparametric Transformation Models with Random Effects for Clustered Failure Time Data. Statistica Sinica, 18: 355-377.

Lin DY, Hu Y, Huang BE. 2008. Simple and Efficient Analysis of Disease Association with Missing Genotype Data. The American Journal of Human Genetics, 82: 444-452.

2007

Zeng D, Lin DY. 2007. Discussion of P. Diggle, D. Farewell and R. Henderson, “Analysis of Longitudinal Data with Drop-out: Objectives, Assumptions and a Proposal. Journal of the Royal Statistical Society, (Series c), 56: 544-545.

Zeng D, Lin DY. 2007. Efficient Estimation for the Accelerated Failure Time Model. Journal of the American Statistical Association, 102:1387-1396.

Huang BE, Amos CI, Lin DY. 2007. Detecting Haplotype Effects in Genomewide Association Studies. Genetic Epidemiology, 31:803-812.

Zeng D, Lin DY. 2007. Semiparametric Transformation Models with Random Effects for Recurrent Events. Journal of the American Statistical Association, 102:167-180.

Lin DY, Huang BE. 2007. The Use of Inferred Haplotypes in Downstream Analyses. The American Journal of Human Genetics, 80:577-579.

Elston RC, Lin DY, Zheng G. 2007. Multistage Sampling for Genetic Studies. Annual Review of Genomics and Human Genetics, 8: 327-342.

Gijbels I, Lin DY, Ying Z. 2007. Non- and semi-parametric analysis of failure time data with missing failure indicators. IMS Lecture Notes Monograph Series, 54:203-223.

Lin DY. 2007. On the Breslow estimator. Lifetime Data Analysis, 13:471–480.

Zeng D, Lin DY. 2007. Maximum likelihood estimation in semiparametric regression models with censored data (with discussion). Journal of the Royal Statistical Society, (Series B), 69(4):507-564.

Lin DY, Huang BE. 2007. The use of inferred haplotypes in downstream analyses. The American Journal of Human Genetics, 80:577-579.

Huang BE, Lin DY. 2007. Efficient association mapping of quantitative trait loci with selective genotyping. The American Journal of Human Genetics, 80: 567-576.

2006

Lange LA, Carlson CD, Hindorff LA, Lange EM, Walston J, Durda JP, Cushman M, Bis JC, Zeng D, Lin DY, Kuller LH, Nickerson DA, Psaty BM, Tracy RP, Reiner AP. 2006. Association of polymorphisms in the CRP gene with circulating c-reactive protein levels and cardiovascular events. The Journal of the American Medical Association, 296:2703-2711.

Diao G, Lin DY. 2006. Semiparametric Variance-Component Models for Linkage and Association Analyses of Censored Trait Data. Genetic Epidemiology, 30(7):570-581.

Zeng D, Lin DY, Avery CL, North KE, Bray MS. 2006. Efficient semiparametric estimation of haplotype-disease associations in case-cohort and nested case-control studies. Biostatistics, 7(3):486-502.

Lin DY. 2006. Evaluating statistical significance in two-stage genomewide association studies. The American Journal of Human Genetics, 78:505-509.

Diao G, Lin DY. 2006. Improving the power of association tests for quantitative traits in family studies. Genetic Epidemiology, 30(4):301-313.

Lin DY, Zeng D. 2006. Likelihood-based inference on haplotype effects in genetic association studies (with discussion). Journal of the American Statistical Association, 101:89-118.

Jin Z, Lin DY, Ying Z. 2006. On least-squares regression with censored data. Biometrika, 93(1):147-161.

Jin Z, Lin DY, Ying Z. 2006. Rank regression methods for multivariate failure time data based on marginal linear models. Scandinavian Journal of Statistics, 33:1-23.

2005

Diao G, Lin DY. 2005. A powerful and robust method for mapping quantitative trait loci in general pedigrees. The American Journal of Human Genetics, 77:97-111.

Lin DY. 2005. An efficient Monte Carlo approach to assessing statistical significance in genomic studies. Bioinformatics, 21:781-787.

Whitsel EA, Boyko EJ, Rautaharju PM, Raghunathan TE, Lin DY, Pearce RM, Weinmann SA, Siscovick DS. 2005. Electrocardiographic QT interval prolongation and risk of primary cardiac arrest in diabetic patients. Diabetes Care, 28:2045-2047.

Zeng D, Lin DY. 2005. Estimating haplotype-disease associations with pooled genotype data. Genetic Epidemiology, 28:70-82.

Pan Z, Lin DY. 2005. Goodness-of-fit methods for generalized linear mixed models. Biometrics, 61:1000-1009.

Zeng D, Lin DY, Yin G. 2005. Maximum likelihood estimation for the proportional odds model with random effects. Journal of the American Statistical Association, 100:470-483.

Lin DY, Zeng D, Millikan R. 2005. Maximum likelihood estimation of haplotype effects and haplotype-environment interactions in association studies. Genetic Epidemiology, 29:299-312.

Arbogast P, Lin DY. 2005. Model-checking techniques for stratified case-control studies. Statistics in Medicine, 24(2):229-247.

Lin DY. 2005. On rapid simulation of P-values. The American Journal of Human Genetics, 77:513-514.

Willan AR, Lin DY, Manca A. 2005. Regression methods for cost-effectiveness analysis with censored data. Statistics in Medicine, 24:131-145.

Diao G, Lin DY. 2005. Semiparametric methods for mapping quantitative trait loci with censored data. Biometrics, 61:1000-1009.

2004

Zou F, Fine JP, Hu J, Lin DY. 2004. An efficient resampling method for assessing genomewide statistical significance in mapping quantitative trait loci. Genetics, 168:2307-2316.

Lin DY, Zou F. 2004. Assessing genomewide statistical significance in linkage studies. Genetic Epidemiology, 27:202-214.

Arbogast P, Lin DY. 2004. Goodness-of-fit methods for matched case-control studies. The Canadian Journal of Statistics, 32:373-386.

Lin DY. 2004. Haplotype-based association analysis in cohort studies of unrelated individuals. Genetic Epidemiology, 26:255-264.

Kulich M, Lin DY. 2004. Improving the efficiency of relative-risk estimation in case-cohort studies. Journal of the American Statistical Association, 99:832-844.

Diao G, Lin DY, Zou F. 2004. Mapping quantitative trait loci with censored observations. Genetics, 168:1689-1698.

Lin DY, Heagerty P. Proceedings of the Second Seattle Symposium in Biostatistics: Analysis of Correlated Data., (2004), Springer-Verlag.

Combes B, Luketic VA, Peters MG, Zetterman RK, Garcia-Tsao G, Munoz SJ, Lin DY, Flye N, Carithers RL. 2004. Prolonged follow-up of patients in the U.S. multicenter trial of ursodeoxycholic acid for primary biliary cirrhosis. American Journal of Gastroenterology, 99:264-268.

Hu C, Lin DY. 2004. Semiparametric failure time regression with replicates of mismeasured covariates. Journal of the American Statistical Association, 99:105-118.

2003

Rea TD, Siscovick DS, Psaty BM, Pearce RM, Raghunathan TE, Whitsel EA, Cobb LA, Weinmann S, Anderson GD, Arbogast P, Lin DY. 2003. Digoxin therapy and the risk of primary cardiac arrest in patients with congestive heart failure - Effect of mild-moderate renal impairment. Journal of Clinical Epidemiology, 56:646-650.

Willan AR, Cook RJ, Chen E and Lin DY. 2003. Incremental net benefit in randomized clinical trials with quality-adjusted survival. Statistics in Medicine, 22:353-362.

Jin Z, Lin DY, Wei LJ, Ying Z. 2003. Rank-based inference for the accelerated failure time model. Biometrika, 90:341-353.

Lin DY. 2003. Regression analysis of incomplete medical cost data. Statistics in Medicine, 22:1181-1200.

Ghosh D, Lin DY. 2003. Semiparametric analysis of recurrent events data in the presence of dependent censoring. Biometrics, 59:877-885.

Lin DY, Ying Z. 2003. Semiparametric regression analysis of longitudinal data with informative drop-outs. Biostatistics, 4:385-398.

Lin DY. "Survival analysis." In: Advanced Medical Statistics. Y, Lu JQ, Fan, editors. World Scientific Publishing Company (2003).

2002

Hu C and Lin DY. 2002. Cox regression with covariate measurement error. The Scandinavian Journal of Statistics. 29:637-655.

Arbogast P, Lin DY, Schwartz SM and Siscovick DS. 2002. Estimating incidence rates from population-based case-control studies in the presence of nonresponses. Biometrical Journal, 44:227-239.

Lemaitre RN, Siscovick DS, Psaty BM, Pearce RM, Raghunathan TE, Whitsel EA, Weinmann SA, Anderson GD, Lin DY. 2002. Inhaled Beta-2 adrenergic receptor agonists and primary cardiac arrest. American Journal of Medicine, 113:711-716.

Gosh D and Lin DY. 2002. Marginal regression models for recurrent and terminal events. Statistica Sinica, 12:663-688.

Lin DY, Wei LJ and Ying Z. 2002. Model-checking techniques based on cumulative residuals. Biometrics, 58:1-12.

Willan AR, Lin DY, Cook RJ and Chen E. 2002. Using inverse-weighting in cost-effectiveness analysis with censored data. Statistical Methods in Medical Research, 11:539-551.

2001

Rea TD, Heckbert SR, Kaplan RC, Psaty BM, Smith NL, Lemaitre RN and Lin D. 2001. Body mass index and the risk of recurrent coronary events following acute myocardial infarction. American Journal of Cardiology, 88:467-472.

Willan AR and Lin DY. 2001. Incremental net benefit in randomized clinical trials. Statistics in Medicine, 20:1563-1574.

Lin DY and Ying Z. 2001. Nonparametric tests for the gap time distributions of serial events based on censored data. Biometrics, 57:369-375.

Heckbert SR, Kaplan RC, Starr JR, Psaty BM, Lin DY, Furberg CD, LaCroix AZ, Anderson GD, Weiss NS. 2001. Risk of recurrent coronary events in relation to use and recent initiation of postmenopausal hormone therapy. Archives of Internal Medicine, 161:1709-1713.

Whitsel E, Raghunathan TE, Peane RM, Lin DY, Rautaharju PM, Lemaitre R, Siscovick DS. 2001. RR interval variation, the QT interval index and risk of primary cardiac arrest among patients without clinically recognized heart disease. European Heart Journal, 22:165-173.

Lin DY and Ying Z. 2001. Semiparametric and nonparametric regression analysis of longitudinal data (with discussion). Journal of the American Statistical Association, 96:103-126.

Lin DY, Wei LJ and Ying Z. 2001. Semiparametric transformation models for point processes. Journal of the American Statistical Association, 96:620-628.

2000

Kulich M, Lin DY. 2000. Additive hazards regression for case-cohort studies. Biometrika, 87:73-88.

Kulich M, Lin DY. 2000. Additive hazards regression with covariate measurement error. Journal of the American Statistical Association, 95:238-248.

Siscovick DS, Raghunathan TE, Lin DY, Weinmann S, Arbogast P, Lemaitre RV, Psaty BM, Alexander R, Cobb L. 2000. Influenza vaccination and the risk of primary cardiac arrest. American Journal of Epidemiology, 152:674-677.

Lin DY. 2000. Linear regression analysis of censored medical costs. Biostatistics, 1:35-47.

Lin DY. "Marginal models for multivariate survival data". In: Encyclopedia of Biostatistics. P. Armitage, T. Colton, editors. John Wiley and Sons (2000).

Ghosh D, Lin DY. 2000. Nonparametric analysis of recurrent events and death. Biometrics, 56:554-562.

Lin DY. 2000. On fitting Cox's proportional hazards models to survey data. Biometrika, 87:37-48.

Lin DY. 2000. Proportional means regression for censored medical costs. Biometrics, 56:775-778.

Lin DY, Wei LJ, Yang I, Ying Z. 2000. Semiparametric regression for the mean and rate functions of recurrent events. Journal of the Royal Statistical Society (Series B), 62:711-730.

Fleming TR, Lin DY. 2000. Survival analysis in clinical trials: past developments and future directions. Biometrics, 56:971-983.

1999

Lin DY, Yao Q, Ying Z. 1999. A general theory on stochastic curtailment for censored survival data. Journal of the American Statistical Association, 94:510-521.

Psaty BM, Koepsell TD, Lin DY, Weiss NS, Siscovick DS, Rosendaal FR, Pahor M, Furberg CD. 1999. Assessment and control for confounding by indication in observational studies. Journal of the American Geriatrics Society, 47:749-754.

Yip PSF, Zhou Y, Lin DY, Fang XZ. 1999. Estimation of population size based on additive hazards models for continuous-time recapture experiments. Biometrics, 55:904-908.

Lemaitre RN, Siscovick DS, Raghunathan TE, Weinmann S, Arbogast P, Lin DY. 1999. Leisure-time physical activity and the risk of primary cardiac arrest. Archives of Internal Medicine, 159:686-690.

Diehr P, Yanez D, Ash A, Hombrook M, Lin DY. 1999. Methods for analyzing health care utilization and costs. Annual Review of Public Health, 20:125-144.

Lin DY, Sun W, Ying Z. 1999. Nonparametric estimation of the gap time distributions for serial events with censored data. Biometrika, 86:59-70.

Etzioni RD, Feuer EJ, Sullivan SD, Lin DY, Hu C, Ramsey SD. 1999. On the use of survival analysis techniques to estimate medical care costs. Journal of Health Economics, 18:365-380.

Lin DY, Yip PSF. 1999. Parametric regression models for continuous-time removal and recapture studies. Journal of the Royal Statistical Society (Series B), 61:401-411.

Lin DY, Arbogast P, Siscovick DS, Lemaitre RN. 1999. Poisson regression with missing durations of exposure. Biometrics, 55:252-257.

Psaty BM, Weiss NS, Furberg CD, Koepsell TD, Siscovich DS, Rosendaal FR, Smith NL, Heckbert SR, Kaplan RC, Lin DY, Fleming TR, Wagner EH. 1999. Surrogated endpoints, clinical outcomes, and the drug approval process for antihypertensive medicine. Journal of the American Medical Association, 282:786-790.

Fisher LD, Lin DY. 1999. Time-dependent covariates in the Cox proportional hazards time-to-event regression analysis. Annual Review of Public Health, 20:145-157.

1998

Lin DY, Wei LJ, Ying Z. 1998. Accelerated failure time models for counting processes. Biometrika, 85:605-618.

Lin DY, Oakes D, Ying Z. 1998. Additive hazards regression for current status data. Biometrika, 85:289-298.

Lin DY, Psaty BM, Kronmal RA. 1998. Assessing the sensitivity of regression results to unmeasured confounders in observational studies. Biometrics, 54:948-963.

Spiekerman CF, Lin DY. 1998. Marginal regression models for multivariate failure time data. Journal of the American Statistical Association, 93:1164-1175.

Albert JM, Ioannidis JPA, Reichelderfer P, Conway B, Coombs RW, Crane L, DeMasi R, Dixon DO, Flandre P, Hughes MD, Kalish L, Larntz K, Lin DY, et al.. 1998. Statistical issues for HIV surrogate markers: Point/counterpoint. Statistics in Medicine, 17:2435-2462.

1997

Lin DY, Fleming TR. (Eds.) 1997. Proceedings of the First Seattle Symposium in Biostatistics: Survival Analysis.. Springer-Verlag.

Lin DY, Ying Z. 1997. Additive hazards regression models for survival data. Proceedings of the First Seattle Symposium in Biostatistics: Survival Analysis. Springer-Verlag.

Deeg HJ, Lin DY, Leisenring W, Boeckh M, Anasetti C, Appelbaum FR, Chauncey TR, Doney K, Flowers M, Martin P, Nash R, Schoch G, Sullivan KM, Whitherspoon RP, Storb R. 1997. Cyclosporine or cyclosporine plus methylprednisolone for prophylaxis of graft-versus-host disease - a prospective randomized trial. Blood, 89:3880-3887.

Heckbert SR, Weiss NS, Koepsell TD, Lemaitre RN, Smith NL, Siscovick DS, Lin DY, Psaty BM. 1997. Duration of estrogen replacement therapy in relation to the risk of incident of myocardial infarction in postmenopausal women. Archives of Internal Medicine, 157:1330-1336.

Lin DY, Etzioni R, Feuer EJ, Wax Y. 1997. Estimating medical costs from incomplete follow-up data. Biometrics, 53:419-434.

Lin DY, Fleming TR, DeGruttola V. 1997. Estimating the proportion of treatment effect explained by a surrogate endpoint. Statistics in Medicine, 16:1515-1527.

Lin DY. 1997. Nonparametric inference for cumulative incidence functions in competing-risks studies. Statistics in Medicine, 16:901-910.

DeGruttola V, Fleming TR, Lin DY, Coombs R. 1997. Validating surrogate markers - Are we being naive?. Journal of Infectious Diseases, 175:237-246.

Schwartz SM, Siscovick DS, Longstreth WT, Psaty BM, Beverly RK, Raghunathan TE, Lin DY, Koepsell TD. 1997. Use of low-dose oral contraceptives and stroke in young women. Annals of Internal Medicine, 127:596-603.

1996

Spiekerman CF, Lin DY. 1996. Checking the marginal Cox model for correlated failure time data. Biometrika, 83:143-156.

Lin DY, Robins JM, Wei LJ. 1996. Comparing two failure time distributions in the presence of dependent censoring. Biometrika, 83:381-393.

Lin DY, Shen L, Ying Z, Breslow NE. 1996. Group sequential designs for monitoring survival probabilities. Biometrics, 52:1033-1041.

Psaty BW, Siscovick DS, Weiss NS, Koepsell TD, Rosendaal FR, Lin DY, Hekbert SR, Wagner EM, Furberg CD. 1996. Hypertension and outcomes research: from clinical trials to clinical epidemiology. American Journal of Hypertension, 9:178-183.

Yip PSF, Huggins RM, Lin DY. 1996. Inference for capture-recapture experiments in continuous time with variable capture rates. Biometrika, 83:477-483.

Lin DY, Spiekerman CF. 1996. Model checking techniques for parametric regression with censored data. Scandinavian Journal of Statistics, 23:157-177.

1995

Combes B, Carithers RL, Maddrey WC, Lin DY, et al. 1995. A randomized, double-blind, placebo-controlled trial of ursodeoxycholic acid in primary biliary cirrhosis. Hepatology, 22:759-766.

Crawford SW, Pepe M, Lin DY, Benedetti F, Deeg HJ. 1995. Abnormalities of pulmonary function tests after marrow transplantation predict non-relapse mortality. American Journal of Respiratory Critical Care Medicine, 152:690-695.

Lin DY. 1995. Multivariate failure time data. In: PF Thall (Ed.), Recent Advances in Clinical Trial Design and Analysis Kluwer Academic Publishers.

Lin DY, Ying Z. 1995. Semiparametric analysis of general additive-multiplicative intensity models for counting processes. Annals of Statistics, 23:1712-1734.

Lin DY, Ying Z. 1995. Semiparametric inference for the accelerated life model with time-dependent covariates. Journal of Statistical Planning and Inference, 44:47-63.

1994

Lin DY, Fleming TR, Wei LJ. 1994. Confidence bands for survival curves under the proportional hazards model. Biometrika, 81:73-81.

Lin DY. 1994. Cox regression analysis of multivariate failure time data: The marginal approach. Statistics in Medicine, 13:2233-2247.

Guo SW, Lin DY. 1994. Regression analysis of multivariate grouped survival data. Biometrics, 50:632-639.

Lin DY, Ying Z. 1994. Semiparametric analysis of the additive risk model. Biometrika, 81:61-71.

1993

Lin DY, Ying Z. 1993. A simple nonparametric estimator of the bivariate survival function under univariate censoring. Biometrika, 80:573-581.

Lin DY, Wei LJ, Ying Z. 1993. Checking the Cox model with cumulative sums of martingale-based residuals. Biometrika, 80:557-572.

Lin DY, Ying Z. 1993. Cox regression with incomplete covariate measurements. Journal of the American Statistical Association, 88:1341-1349.

Lin DY, Fischl MJ, Schoenfeld DA. 1993. Evaluating the role of CD4-lymphocyte changes as surrogate endpoints in human immunodeficiency virus clinical trials. Statistics in Medicine, 12:835-842.

Lin DY. 1993. MULCOX2: A general computer program for the Cox regression analysis of multivariate failure time data. Computer Programs in Biomedicine, 40:279-294.

Koenig JQ, Larson TV, Hanley QS, Rebolledo V, Dumler K, Checkoway H, Wang SZ, Lin DY, Pierson WE. 1993. Pulmonary function changes in children associated with fine particulate matter. Environmental Research, 63:26-38.

1992

Lin DY, Geyer CJ. 1992. Computational methods for semiparametric linear regression with censored data. Journal of Computational and Graphical Statistics, 1:77-90.

Lin DY, Wei LJ. 1992. Discussion of A Agresti, "A survey of exact inference for contingency tables". Statistical Science, 7:166-167.

Lin DY. 1992. GOFCOX: A computer program for the goodness-of-fit analysis of the Cox regression model. Computer Programs in Biomedicine, 38:101-105.

Lin DY, Liu PY. 1992. Nonparametric sequential tests against ordered alternatives in multiple-armed clinical trials. Biometrika, 79:420-425.

Lin DY. 1992. Sequential log rank tests adjusting for covariates with the accelerated life model. Biometrika, 79:523-529.

1991

Lin DY, Wei LJ, DeMets DL. 1991. Exact statistical inference for group sequential trials. Biometrics, 47:1399-1408.

Lin DY, Wei LJ. 1991. Global goodness-of-fit tests for the general Cox regression model. Statistica Sinica, 1:1-17.

Lin DY. 1991. Goodness-of-fit analysis for the Cox regression model based on a class of parameter estimators. Journal of the American Statistical Association, 86:725-728.

Lin DY. 1991. Nonparametric sequential testing in clinical trials with incomplete multivariate observations. Biometrika, 78:123-131.

Lin DY, Wei LJ. 1991. Repeated confidence intervals for a scale change in a sequential survival study. Biometrics, 47:289-294.

1990

Wei LJ, Ying Z, Lin DY. 1990. Linear regression analysis of censored survival data based on rank tests. Biometrika, 77:845-851.

Lin DY. 1990. MULCOX: A computer program for the Cox regression analysis of multiple failure time variables. Computer Programs in Biomedicine, 32:125-135.

Wei LJ, Smythe RT, Lin DY, Park TS. 1990. Statistical inference with data-dependent treatment allocation rules. Journal of the American Statistical Association, 85:156-162.

1989

Lin DY, Wei LJ. 1989. Discussion of C Jennison and BW Turnbull, "Interim analysis: the repeated confidence interval approach". Journal of the Royal Statistical Society, 51:347-348.

Lin DY, Wei LJ. 1989. Discussion of JH Ware, "Investigating therapies of potentially great benefit: ECMO". Statistical Science, 4:324-325.

Wei LJ, Lin DY, Weissfeld L. 1989. Regression analysis of multivariate incomplete failure time data by modeling marginal distributions. Journal of the American Statistical Association, 84:1065-1073.

Lin DY, Wei LJ. 1989. The robust inference for the Cox proportional hazards model. Journal of the American Statistical Association, 84:1074-1078.

1988

Brown MB, Lin DY, Normolle DP, Herzog AR. Models for and the effect of nonresponse in a survey of the noninstitutionalized elderly.The 1988 Proceedings of the Section on Survey Research Methods of the American Statistical Association, (1988).