================================================================================ HAPSTAT Analysis ================================================================================ C:\hapstat\data\case-control.2.dat C:\hapstat\data\trio.dat ================================================================================ ================================================================================ Haplotype frequencies under Hardy-Weinberg equilibrium ================================================================================ Tolerance: 1e-006 Maximum iterations: 2000 Subjects: 2000 Cases: 1000 Controls: 1000 Trios: 50 Haplotype Trios ------------------------- 00011 0.0152 00100 0.0101 01011 0.1255 01100 0.2893 01111 0.0050 10000 0.0050 10011 0.2951 10100 0.0496 10110 0.0300 11011 0.1643 11100 0.0060 11111 0.0050 ------------------------- Iterations 16 Log-Likelihood -294.8697 ------------------------- Status: Success. ================================================================================ Additive haplotype effects under Hardy-Weinberg equilibrium ================================================================================ Tolerance: 0.0001 Maximum iterations: 500 Subjects: 1997/2000 Cases: 999/1000 Controls: 998/1000 Trios: 50/50 Estimate StdError Z-Stat P-Value ---------------------------------------------------------- Effects ---------------------------------------------------------- Gene 2 0 -0.2669 0.0665 -4.0121 0.0001 ---------------------------------------------------------- Frequencies ---------------------------------------------------------- 00011 0.0052 0.0014 3.7159 0.0002 00100 0.0044 0.0012 3.5542 0.0004 01011 0.1285 0.0078 16.5216 0.0000 01100 0.2768 0.0090 30.8796 0.0000 01111 0.0049 0.0048 1.0265 0.3046 10000 0.0094 0.0084 1.1119 0.2662 10011 0.3438 0.0088 38.9249 0.0000 10100 0.0543 0.0084 6.4326 0.0000 10110 0.0260 0.0025 10.3462 0.0000 11011 0.1349 0.0071 18.9722 0.0000 11100 0.0081 0.0017 4.7585 0.0000 11111 0.0037 0.0037 1.0177 0.3088 ---------------------------------------------------------- Iterations: 5 Log-Likelihood: -5483.0066 Status: Success. ==================== Report generated on 06/18/08 14:11:04 =====================