================================================================================ === HAPSTAT Analysis ====================== C:\hapstat\data\longitudinal.dat === ================================================================================ ================================================================================ Haplotype frequencies under Hardy-Weinberg equilibrium ================================================================================ Tolerance: 1e-006 Maximum iterations: 2000 Subjects: 1000 Haplotype Longitudinal ------------------------------ 00000 0.0406 00100 0.0658 00111 0.0950 01010 0.0256 01101 0.2590 01110 0.2026 10101 0.1041 11000 0.0270 11011 0.1804 ------------------------------ Iterations 16 Log-Likelihood -3264.5419 ------------------------------ Status: Success. ================================================================================ Additive haplotype effects under Hardy-Weinberg equilibrium ================================================================================ Tolerance: 0.0001 Maximum iterations: 500 Subjects: 1000 Estimate StdError Z-Stat P-Value ------------------------------------------------------------- Effects ------------------------------------------------------------- Environment Time 0.5291 0.1583 3.3418 0.0008 Gene 01101 0.9282 0.6757 1.3736 0.1696 01101*Time 0.3531 0.1958 1.8036 0.0713 Intercept 179.3536 0.5465 328.2138 0.0000 Error variance 147.8201 3.3055 44.7190 0.0000 ------------------------------------------------------------- Frequencies ------------------------------------------------------------- 00000 0.0406 0.0045 9.0403 0.0000 00100 0.0658 0.0058 11.2893 0.0000 00111 0.0950 0.0067 14.2395 0.0000 01010 0.0256 0.0038 6.6390 0.0000 01101 0.2590 0.0098 26.4397 0.0000 01110 0.2026 0.0090 22.4463 0.0000 10101 0.1041 0.0069 14.9925 0.0000 11000 0.0270 0.0038 7.0523 0.0000 11011 0.1804 0.0087 20.6182 0.0000 ------------------------------------------------------------- Variance components ------------------------------------------------------------- var(Intercept) 13.4946 2.0355 6.6298 0.0000 ------------------------------------------------------------- Iterations: 193 Log-Likelihood: -23037.2942 Status: Success. ==================== Report generated on 02/29/08 15:09:20 ===================== ================================================================================ === HAPSTAT Analysis ====================== C:\hapstat\data\longitudinal.dat === ================================================================================ ================================================================================ Additive haplotype effects under Hardy-Weinberg equilibrium ================================================================================ Tolerance: 0.0001 Maximum iterations: 500 Subjects: 1000 Estimate StdError Z-Stat P-Value ------------------------------------------------------------- Effects ------------------------------------------------------------- Environment Time 0.5291 0.1638 3.2299 0.0012 Gene 01101 0.9282 0.6437 1.4419 0.1493 01101*Time 0.3531 0.2026 1.7432 0.0813 Intercept 179.3536 0.5206 344.5293 0.0000 Error variance 144.3488 3.7274 38.7263 0.0000 ------------------------------------------------------------- Frequencies ------------------------------------------------------------- 00000 0.0406 0.0045 9.0403 0.0000 00100 0.0658 0.0058 11.2893 0.0000 00111 0.0950 0.0067 14.2395 0.0000 01010 0.0256 0.0038 6.6390 0.0000 01101 0.2590 0.0098 26.4397 0.0000 01110 0.2026 0.0090 22.4463 0.0000 10101 0.1041 0.0069 14.9925 0.0000 11000 0.0270 0.0038 7.0523 0.0000 11011 0.1804 0.0087 20.6182 0.0000 ------------------------------------------------------------- Variance components ------------------------------------------------------------- var(Intercept) 1.3892 0.7998 1.7369 0.0824 cov(Intercept,Time) 0.1101 2.3757 0.0464 0.9630 var(Time) 1.0296 8.2378 0.1250 0.9005 ------------------------------------------------------------- Iterations: 134 Log-Likelihood: -23022.0825 Status: Success. ==================== Report generated on 02/29/08 15:13:14 =====================