================================================================================ === HAPSTAT Analysis ============================ C:\hapstat\data\cohort.dat === ================================================================================ ================================================================================ Haplotype frequencies under Hardy-Weinberg disequilibrium ================================================================================ Tolerance: 1e-006 Maximum iterations: 2000 Subjects: 5000 Events: 687 Censoring rate: 0.86 Haplotype Cohort Subcohort -------------------------------------- 00100 0.0103 0.0096 00110 0.0672 0.0640 00111 0.1601 0.1644 01100 0.1625 0.1468 01101 0.2190 0.2228 01110 0.0134 0.0147 01111 0.0079 0.0086 10010 0.0927 0.0961 10011 0.2668 0.2729 -------------------------------------- Iterations 159 72 Rho 0.0391 0.0361 Log-Likelihood -5773.8923 -4460.4553 -------------------------------------- Cohort Status: Success. Subcohort Status: Success. ================================================================================ Dominant haplotype effects under Hardy-Weinberg disequilibrium ================================================================================ Tolerance: 0.0001 Maximum iterations: 500 Subjects: 4982/5000 Events: 683/687 Censoring rate: 0.86 Estimate StdError Z-Stat P-Value ------------------------------------------------------------ Effects ------------------------------------------------------------ Environment Smoking 0.9516 0.1280 7.4347 0.0000 Gene 10011 -0.3263 0.1979 -1.6490 0.0992 10011*Smoking 0.1031 0.2212 0.4660 0.6412 ------------------------------------------------------------ Frequencies ------------------------------------------------------------ 00100 0.0102 0.0018 5.8417 0.0000 00110 0.0667 0.0052 12.7835 0.0000 00111 0.1596 0.0066 24.1249 0.0000 01100 0.1601 0.0069 23.2542 0.0000 01101 0.2199 0.0075 29.2408 0.0000 01110 0.0161 0.0022 7.3254 0.0000 10010 0.0928 0.0059 15.6813 0.0000 10011 0.2745 0.0084 32.5267 0.0000 Rho 0.0380 0.0107 3.5690 0.0004 ------------------------------------------------------------ Iterations: 51 Log-Likelihood: -11930.7394 Status: Success. ==================== Report generated on 06/18/08 14:38:11 =====================