The following links provide the supplemental table and figures for the paper:
Barry WT, Nobel AB, Wright FA.  Significance analysis of functional categories in gene expression studies: a structured permutation approach. Bioinformatics, 2005. 21:1943-0. The SAFE R package is now available on Bioconductor
 
Go to Bioconductor  and follow the links to Release Packages for the current version of SAFE.
 
 
Supplementary Table. 
 
Supplementary Figure 1. 
 
Supplementary Figure 2. 
 
Supplementary Figure 3. 
 
Supplementary Figure 4.